American Family Children's Hospital


Siemens MicroCAT-2Anatomic MicroCT Scanning

In December 2005, we acquired the microCATII from Siemens. This scanner has a large field-of-view for scanning large rodents (ie. rats up to 300 grams), and a variable source for high-resolution scanning (~20 microns). This scanner was funded entirely by an NCRR shared instrumentation grant awarded to Dr. Weichert.


In December 2006, we received the first Inveon microCT scanner from Siemens. This CT can achieve 50 micron spatial resolution, but it is primarily used to acquire anatomical images for functional PET scanning.

Inveon microPET/CTFunctional MicroPET and Hybrid MicroPET/CT Scanning

In December 2006, we received the first ever Inveon hybrid microPET/CT scanner from Siemens. Coupled with our own proprietary cell-selective imaging contrast agents, this scanner affords our investigators unique disease detection and evaluation which can only be provided at the UW. This scanner provides unsurpassed PET sensitivity (>10%), 1.2mm resolution, and a large axial field of view (13 cm). The anatomical CT and the functional PET images are automatically co-registered for easy analysis. An integrated isoflurane anesthetic gas system and physiologic monitoring system allow for image gating and animal monitoring during scanning.

Gamma Counting


Gamma CountingThe PerkinElmer Wizard2 is a well-type, 10-detector gamma counter that collects signal from 3-dimensions of a radioactive sample versus 2-dimensions in autoradiography. There are consistent background readings and minimal crosstalk between samples making each measurement more precise. A built-in isotope library consisting of 45 radionuclides automatically adjusts window settings and half-lives, while any new isotopes can be added to the library manually. This suits the needs of any researcher interested in collecting biodistribution and relative concentration of radioligands in blood and tissues as a supplemental or surrogate measure to imaging and therapy.

Ivis SpectrumOptical Scanning


The IVIS Spectrum (Perkin Elmer) is capable of both bioluminescence and fluorescence scanning. We routinely use this system for non-invasive longitudinal monitoring of cancer progression, metastatic cell trafficking and gene expression and delivery in living animals. This system is also used to assess hypoxia, enzyme activity, angiogenesis, apoptosis, arthritis, neurological and infectious diseases, among many other applications. An optimized set of high efficiency filters and spectral un-mixing algorithms affords non-invasive imaging of bioluminescent and fluorescent reporters across the visible light spectrum up to the near-infrared wavelength. It also offers single-view 3D tomography for both fluorescent and bioluminescent reporters that can be analyzed in an anatomical context using a digital mouse atlas. The Spectrum can excite from the bottom (trans-illumination) for deep tissue or from the top (epi-illumination) to illuminate in-vivo fluorescent probes. 3D diffuse fluorescence tomography can be performed to determine source localization and concentration using the combination of structured light and trans-illumination fluorescent images. The instrument is equipped with ten 30nm bandwidth excitation filters and eighteen 20nm bandwidth emission filters that significantly reduce auto-fluorescence by the spectral scanning of filters and the use of spectral un-mixing algorithms. In addition, the spectral un-mixing tools allow the researcher to separate signals from multiple fluorescent reporters within the same animal.

FluobeamIntraoperative Real Time NIR Scanning


The Small Animal Imaging Facility (SAIF) is one of the first facilities in the US to obtain the Fluobeam™ (Fluoptics) hand-held imaging system which detects in-vivo near-infrared fluorescence in 2D. This system has a laser excitation dialed in at 780nm and a long pass emission filter at >820nm, and a crown of LEDs allowing one to work under white light in open space with a direct access to the animal. Focused on cancer surgery improvement, this technology will afford oncology surgeons a radically new efficiency in tumor resection. The success of this concept will largely depend on the ability of the optical agent to selectively localize in the tumor prior to surgery. Several UW investigators are currently developing tumor-specific NIR optical probes for intravenous administration that may potentially afford real-time intraoperative tumor margin illumination. Intraoperative margin illumination could have a significant impact in glioma resection and determining lymph node involvement during breast cancer resection, for example. This newly introduced unit is designed to be used in a surgical suite and therefore offers rapid clinical translation potential.

Varian 4.7T Magnetic Resonance Imaging Scanner

High-Resolution MRI Scanning

Installation of an Agilent 4.7T small animal scanner was completed in April of 2007.  The horizontal bore imaging/spectroscopy system gives us the capability to scan rodents up to 600 grams with an in-plane resolution of 50 microns. The system is also equipped with a rodent isoflurane gas anesthesia system and physiologic monitoring system for image gating. We can scan broadband nuclei including 1H, 31P, 19F and 13C. T1 and T2 anatomical scans are possible as well as the creation of T1, T2 and T2* maps. The system is also capable of functional MRI (EPI), diffusion and diffusion tensor imaging, localized spectroscopy (STEAM and PRESS), chemical-shift imaging, and perfusion imaging with Gd-based contrast agents. These specifications allow investigators to visualize and quantify a variety of moieties and processes including metabolites (NMR spectroscopy), anatomical structures, tumor morphology, blood flow/vessels, fiber pathways, drug effects, brain activity, and heart motion.  In 2008, we became one of only 5 institutions in the US to receive a commercial dynamic nuclear polarization system from GE. This system allows rapid in-vivo investigation of biochemical events enhanced with carbon-13 labeled substrates at enhanced sensitivity levels.

High-Resolution Ultrasound and Photoacoustic Scanning


High-Resolution Ultrasound and Photoacoustic ScanningIn April 2015, the SAIF acquired the VisualSonics Vevo2100 LAZR (FujiFilm) ultrasound and photoacoustic imaging system. The system is a high frequency array-based ultrasound system with center frequencies in the 20-70 MHz range, designed specifically for the depth and resolution needed for scanning small animals. In turn, photoacoustic imaging uses non-ionizing laser pulses which are non-invasively delivered into biological tissues and/or contrast agents creating a momentary thermoelastic expansion at the ultrasonic emission wavelength, and detected by traditional ultrasound transducers. Measuring this thermoelastic data allows for analysis of functional parameters such as oxygen saturation, total hemoglobin and the microdistribution of biomarkers in real-time. The system can be used as a stand-alone ultrasound or in conjunction with photoacoustic imaging. When used simultaneously, there is an automatic co-registration of photoacoustic signal to the anatomic ultrasound image. Included with the system is an integrated rail mount that allows for easy setup and adjustment of the ultrasound probe as well as a heated animal positioning platform with physiological monitoring. A motorized probe driver allows for real-time 3D volumetric imaging, and a mounted micro-injection system is available for precise, image-guided injections.

Heme Analyzing

Heme AnalyzingIn Fall 2016, the SAIF acquired the Abaxis VetScan HM5. This system is a fully automated hematology analyzer that uses impedance technology to distinguish blood cell types based on the pulse generated as each cell passes through an electrically charged aperture. The volume of each cell is directly proportional to the magnitude of the electrical pulse generated.


This size determination, along with susceptibility to various lysing agents, provides the basis for blood differentials on as little as 25µl of blood (validated for mouse, rabbit, rat, ferret, pig, goat, monkey, sheep and guinea pig). This analyzer allows investigators the ability to monitor up to 22 heme parameters, including platelet (thrombocyte) counts, mean volume, hematocrit, and distribution width, on radioactive animals during tumor treatment. Other heme parameters include red blood cell (RBC) count and indices, RBC hemoglobin, hematocrit, lymphocytes and lymphocyte percentage, monocytes and monocyte percentage, neutrophil and neutrophil percentage, eosinophil and eosinophil percentage, basophil and basophil percentage, mean cell volume, mean corpuscular hemoglobin, mean corpuscular hemoglobin concentration, and red cell distribution width.


Analysis Workstations


We provide three powerful PCs equipped with up to 64GB of RAM, dual 3.1 GHz processors, NVIDIA Quadro 4000 graphics cards, on a 64-bit Windows 7 OS to facilitate 2-D and 3-D image viewing, manipulation, and quantitative analysis of large files. The workstations are furnished with several imaging software packages including Siemens Inveon Research Workplace, Image J, GIMP, Amira, VivoQuant, and IVIS’s Living Image. We can easily convert imaging data to a universal DICOM format if you choose to perform analysis on your own workstation.

Animal Housing


Animal HousingIn order to ensure and preserve the pathological integrity of the Laboratory Animal Resources (LAR) facilities, investigators are required to transfer their animals to our general microimaging protocol (M005532) by completing the animal transfer form. Only after approval from LAR can animals be transported to our facility in WIMR B1334C. Radioactive animals will remain in our holding facility until the animals are euthanized and the experiment is completed. Under no circumstances are radioactive animals allowed to leave our facility for placement back into their original housing facility. Radioactive materials can only leave the imaging facility if approved by radiation safety. In approved cases, non-radioactive animals can be rehoused in a WIMR vivarium quarantine room.


The SAIF animal housing facility has a passively ventilated rodent cage system in order to ensure healthy maintenance of the animals. Our facility is on an automatic 12hr dark/light cycle, and the temperature, pressure, and humidity are strictly regulated. Animal heath, bedding, food, and water are monitored twice per day and maintained as necessary by the SAIF and LAR staff. Animals are permitted to be housed in our facility for long periods of time for longitudinal studies. No additional housing costs are applied if the animals are part of an imaging experiment. If the animals are not part of an imaging experiment but are housed in the SAIF facility (ie. biodistribution study with radioactive agents), a housing fee will be applied. 

Micro-Imaging Suite


We have enjoyed tremendous institutional support for our 2,000-square-foot facility that was specifically designed for small animal and molecular imaging in the WIMR (Wisconsin Institutes for Medical Research) 1 tower, a 9-story research building attached to the hospital, and adjacent to the School of Pharmacy and the Waisman Research Institute. This new facility houses the Siemens microCATII, Siemens Inveon Hybrid microPET/CT, Perkin Elmer IVIS, Fluoptics Fluobeam, and Agilent 4.7T MRI and associated hyperpolarization apparatus. We have a designated area for image analysis with our high end workstations. We boast our own animal holding room which has strictly regulated temperature, humidity, pressure, and light cycles, and which contains passively ventilated rodent housing racks for holding radioactive animals and those involved in long-term tumor monitoring studies. The new WIMR complex is strategically located adjacent to the new animal vivarium where non-radioactive animals involved in imaging studies are housed. This preclinical and molecular imaging suite is designed with translational research in mind as supported by our lab neighboring the clinical research GE Discovery VCT and GE Discovery 710 PET/CT scanners. Also next to the small animal imaging suite are the cyclotron, radiochemistry, and radiopharmacy facilities which provide expertise on PET agent synthesis in a collaborative and fee-for-service basis. The small animal imaging director and manager can coordinate radionuclide and radiotracer synthesis with the Cyclotron Group led by Drs. Jerry Nickles and Todd Barnhart in the Medical Physics Department. Alternatively, agents may be acquired from commercial sources such as PETNET or IBA Molecular.